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Orthogonal proteomics methods to unravel the HOTAIR interactome

Sci Rep. 2022-01; 
Louis Delhaye, Edith De Bruycker, Pieter-Jan Volders, Daria Fijalkowska, Delphine De Sutter, Sven Degroeve, Lennart Martens, Pieter Mestdagh, Sven Eyckerman
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Proteins, Expression, Isolation and Analysis … Samples were first cooled down to room temperature, loaded and ran on a 4–12% ExpressPlus PAGE 4–12% pre-cast gel (Genscript M421215) according to the manufacturer’s … Get A Quote

摘要

Accumulating evidence highlights the role of long non-coding RNAs (lncRNAs) in cellular homeostasis, and their dysregulation in disease settings. Most lncRNAs function by interacting with proteins or protein complexes. While several orthogonal methods have been developed to identify these proteins, each method has its inherent strengths and limitations. Here, we combine two RNA-centric methods ChIRP-MS and RNA-BioID to obtain a comprehensive list of proteins that interact with the well-known lncRNA HOTAIR. Overexpression of HOTAIR has been associated with a metastasis-promoting phenotype in various cancers. Although HOTAIR is known to bind with PRC2 and LSD1 protein complexes, only very limited unbiased compreh... More

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