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Single-conformation spectroscopy of cold, protonated PG-containing peptides: switching β-turn types and formation of a sequential type II/II' double β-turn

Phys Chem Chem Phys. 2022-01; 
John T Lawler, Christopher P Harrilal, Andrew F DeBlase, Edwin L Sibert, Scott A McLuckey, Timothy S Zwier
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Proteins, Expression, Isolation and Analysis … Solutions of YA D PGA, YA L PGA, and YAA D PGAAA (Genscript) were prepared in 50 : 50 methanol : water solvent at a concentration of 200 μM and electrosprayed to create the?… Get A Quote

摘要

D-Proline (Pro, P) is widely utilized to form β-hairpin loops in engineered peptides that would otherwise be unstructured, most often as part of a PG sub-unit that forms a β-turn. To observe whether PG facilitated this effect in short protonated peptides, conformation specific IR-UV double resonance photofragment spectra of the cold (~10 K) protonated P and P diastereomers of the pentapeptide YAPGA was carried out in the hydride stretch (2800-3700 cm) and amide I/II (1400-1800 cm) regions. A model localized Hamiltonian was developed to better describe the 1600-1800 cm region commonly associated with the amide I vibrations. The CO stretch fundamentals experience extensive mixing with the N-H bending funda... More

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