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Atomic force microscopy measurements and model of DNA bending caused by binding of AraC protein

J Mol Recognit. 2022-09; 
Mary Lowe, Benjamin Glezer, Brendan Toulan, Brian Hess
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摘要

Atomic force microscopy (AFM) was used to conduct single-molecule imaging of protein/DNA complexes involved in the regulation of the arabinose operon of Escherichia coli. In the presence of arabinose, the transcription regulatory protein AraC binds to a 38?bp region consisting of the araI1 and araI2 half-sites. The domain positioning of full-length AraC, when bound to DNA, was not previously known. In this study, AraC was combined with 302 and 560?bp DNA and arabinose, deposited on a mica substrate, and imaged with AFM in air. High resolution images of 560?bp DNA, where bound protein was visible, showed that AraC induces a bend in the DNA with an angle 60°?±?12° with a median of 55°. These results ... More

關鍵詞

AraC, DNA bending, DNA flexibility, DNA-binding protein, DNA-protein interaction, atomic force microscopy, molecular recognition, structural model
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