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Plant transcripts with long or structured uORFs in NDL2 5' UTR can escape NMD in a reinitiation independent manner

J Exp Bot. 2022-09; 
Miryam A Cymerman, Helen Saul, Ronit Farhi, Karina Vexler, Dror Gottlieb, Irina Berezin, Orit Shaul
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Proteins, Expression, Isolation and Analysis … UPF1 associates with the mRNA cotranscriptionally and is … synthesized by GenScript flanked by the BamHI and NcoI … The modified coding sequences were synthesized by GenScript. … Get A Quote

摘要

Many eukaryotic transcripts contain upstream open-reading-frames (uORFs). Translated uORFs can inhibit the translation of main ORFs by imposing the need for reinitiation of translation. Translated uORFs can also lead to transcript degradation by the nonsense-mediated mRNA decay (NMD) pathway. In mammalian cells, translated uORFs were shown to target their transcripts to NMD if the uORFs were long (>23-32 amino-acids), structured, or inhibit reinitiation. Reinitiation was shown to rescue uORF-containing mammalian transcripts from NMD. Much less is known about the significance of the length, structure and reinitiation efficiency of translated uORFs for NMD targeting in plants. Although high-throughput studies sug... More

關鍵詞

Arabidopsis, NMD, nonsense-mediated mRNA decay, reinitiation, uORF, upstream open-reading-frame
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